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PDBsum entry 3qju

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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 3qju calculated with MOLE 2.0 PDB id
3qju
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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12 tunnels, coloured by tunnel radius 15 tunnels, coloured by tunnel radius 15 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.33 52.8 0.35 0.58 9.7 79 4 0 3 11 6 0 0  801 HAS A
2 1.32 53.6 0.31 0.55 10.6 79 4 0 3 11 6 0 0  801 HAS A
3 1.42 59.0 1.14 0.72 8.0 75 4 0 2 17 8 0 0  801 HAS A
4 1.42 59.9 1.04 0.68 8.4 75 4 0 2 17 8 0 0  801 HAS A
5 1.42 61.5 0.13 0.30 12.4 80 7 1 5 16 6 1 0  801 HAS A
6 1.42 62.3 0.04 0.26 12.8 80 7 1 5 16 6 1 0  801 HAS A
7 1.36 20.1 1.13 0.36 10.5 83 1 3 1 6 1 1 0  
8 1.31 20.5 1.65 0.59 7.8 80 2 1 1 7 1 1 0  
9 1.57 9.5 -0.31 -0.21 11.4 89 0 1 0 4 0 1 0  
10 1.58 9.7 0.59 0.01 9.6 86 0 1 0 4 0 1 0  
11 2.70 17.6 -1.05 -0.47 17.6 77 1 1 0 2 0 2 0  
12 1.79 5.4 -1.23 -0.38 26.3 89 1 2 1 2 0 1 0  
13 1.67 5.7 -1.98 -0.55 12.0 64 1 0 1 0 1 0 0  
14 1.60 8.2 -0.48 0.11 1.9 67 0 0 0 1 1 3 0  
15 1.38 8.9 -0.34 0.06 2.4 90 0 0 1 3 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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