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PDBsum entry 3qcd

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Tunnel analysis for: 3qcd calculated with MOLE 2.0 PDB id
3qcd
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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8 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.60 10.2 0.76 -0.07 2.0 100 0 0 0 3 0 0 0  
2 1.73 11.6 1.84 0.48 1.6 100 0 0 0 4 0 0 0  
3 1.45 13.5 -1.09 -0.19 17.5 89 1 1 2 3 1 0 0  
4 1.42 14.0 -1.22 -0.22 17.9 87 2 1 2 3 1 0 0  
5 1.46 9.9 -1.47 -0.58 5.1 74 1 1 2 1 1 1 0  
6 1.45 10.0 -1.41 -0.59 11.2 73 1 1 1 1 1 1 0  
7 1.45 12.0 -1.76 -0.41 16.8 80 1 1 3 2 1 0 1  2001 VO4 A
8 2.07 7.3 1.25 0.81 16.8 82 2 1 0 4 1 0 0  
9 1.53 3.9 1.34 0.25 3.3 84 0 1 1 4 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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