PDBsum entry 3qc9 Go to PDB code:  Tunnel analysis for: 3qc9 calculated with MOLE 2.0 PDB id 3qc9 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.28 1.32 16.4 -0.89 -0.10 19.8 69 2 2 0 3 3 1 0   2 1.27 1.32 24.5 -0.82 -0.24 15.6 71 3 1 0 3 3 1 0   3 1.22 1.22 15.5 1.07 0.18 3.3 72 1 0 1 4 2 0 0   4 1.21 1.20 16.0 0.76 0.09 3.2 71 1 0 1 4 2 1 0   5 1.32 1.45 23.3 -1.22 -0.42 16.1 70 3 1 0 1 3 1 0   6 1.32 1.45 26.1 -1.38 -0.33 17.2 69 3 1 0 1 3 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.