spacer
spacer

PDBsum entry 3q7d

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 3q7d calculated with MOLE 2.0 PDB id
3q7d
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
17 tunnels, coloured by tunnel radius 13 tunnels, coloured by tunnel radius 13 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.62 8.6 0.49 0.23 3.0 80 1 0 2 2 1 1 0  
2 1.26 12.4 0.01 -0.36 5.0 79 1 0 1 3 0 1 0  
3 1.51 3.7 -1.82 -0.94 24.2 93 0 2 1 0 0 0 0  
4 1.68 7.1 0.40 -0.15 2.3 77 0 0 1 4 0 2 0  
5 1.50 8.4 -1.18 -0.62 19.2 81 2 1 0 2 0 0 0  
6 1.33 12.3 -1.28 -0.42 24.1 81 2 1 0 2 0 1 0  
7 2.86 3.5 -0.43 -0.18 2.2 80 0 0 2 0 1 1 0  
8 1.59 1.3 0.65 0.49 16.2 86 1 0 1 2 0 0 0  
9 1.62 10.2 0.68 0.39 2.7 81 1 0 3 2 2 1 0  
10 2.07 4.9 -2.22 -0.78 19.2 95 1 2 2 1 0 0 0  
11 1.48 1.9 1.08 0.54 12.6 86 1 0 1 2 0 0 0  
12 1.41 12.0 0.55 -0.18 2.9 87 0 1 2 3 0 1 0  
13 1.42 12.4 0.24 -0.24 3.0 83 0 1 2 3 0 2 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
spacer
spacer