PDBsum entry 3pxr

Pore analysis for: 3pxr calculated with

MOLE 2.0

PDB id

3pxr

Pores calculated on whole structure

Pores calculated excluding ligands

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11 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.27

1.64

35.6

-0.65

-0.49

12.0

87

3

2

1

4

0

1

0

2

1.25

1.24

37.7

-1.25

-0.45

17.5

79

3

4

2

3

2

1

0

3

1.40

2.26

47.1

-0.57

0.13

17.4

78

3

2

0

5

3

1

0

4

1.15

1.69

47.1

1.13

0.40

8.5

88

2

2

1

8

1

1

0

5

1.23

1.23

50.2

-0.79

-0.20

16.2

82

2

3

0

3

1

0

0

6

1.18

1.68

50.9

0.27

0.08

10.0

85

3

2

2

9

2

2

0

7

1.16

1.58

53.1

0.20

0.17

11.5

86

4

1

1

9

2

1

0

8

1.38

1.38

64.2

-1.86

-0.49

24.9

79

4

5

1

3

1

0

0

9

1.25

1.64

65.8

-1.51

-0.51

20.5

83

6

3

1

4

1

1

0

10

1.30

1.34

70.1

-1.73

-0.28

22.6

77

5

2

0

3

4

1

0

11

1.44

1.69

70.8

-1.55

-0.40

20.4

78

4

4

1

3

4

2

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.