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PDBsum entry 3pw7

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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 3pw7 calculated with MOLE 2.0 PDB id
3pw7
Pores calculated on whole structure Pores calculated excluding ligands

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7 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.38 2.55 41.2 -1.35 -0.37 19.2 90 6 3 4 4 1 0 0  CA 345 E DCP 400 E DG 374 F DA 376 F AFN 387 F DT
358 G
2 2.58 2.58 43.0 -0.15 0.09 13.2 91 5 0 3 5 0 0 0  DT 373 F DT 377 F DC 378 F DC 379 F AFN 387 F DG
350 G DG 351 G DA 353 G DG 354 G DG 355 G DA 356
G DT 357 G DT 358 G
3 2.27 3.32 56.3 -2.45 -0.52 27.1 79 8 4 4 1 3 0 0  DG 374 B DA 375 B DA 376 B DT 377 B DC 378 B DC
379 B DT 380 B DG 349 C DG 350 C DT 357 C DT 358 C
4 1.21 2.80 63.9 -1.17 -0.26 18.0 83 7 1 2 3 2 0 0  DA 376 B DT 377 B DC 378 B DC 379 B DT 380 B DG
350 C DT 357 C DT 358 C
5 1.15 2.74 92.9 -1.51 -0.19 21.7 79 8 7 4 7 6 2 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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