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PDBsum entry 3pw3

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 3pw3 calculated with MOLE 2.0 PDB id
3pw3
Pores calculated on whole structure Pores calculated excluding ligands

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14 pores, coloured by radius 12 pores, coloured by radius 12 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.12 3.00 25.8 -0.98 -0.48 9.9 70 2 2 2 1 3 2 0  MSE 82 D MSE 129 D
2 1.60 2.37 58.5 -1.54 -0.53 13.6 92 2 3 10 1 1 1 0  MSE 243 D MSE 243 E
3 1.54 2.28 64.7 -2.12 -0.52 26.1 88 4 7 8 3 1 0 0  
4 1.53 2.25 68.4 -1.81 -0.56 19.2 92 4 6 9 1 1 0 0  MSE 243 A EDO 428 A
5 1.62 1.72 70.1 -1.63 -0.32 21.5 85 7 7 4 3 3 0 0  MSE 172 F CL 425 F
6 1.62 2.92 72.4 -2.00 -0.36 26.4 81 7 8 4 4 3 0 0  MSE 172 D
7 1.55 2.25 93.0 -1.80 -0.46 24.1 88 5 7 10 3 1 0 0  MSE 243 A MSE 299 A EDO 428 A
8 1.62 1.71 94.6 -1.62 -0.29 24.3 83 8 8 5 5 3 0 0  MSE 299 A MSE 172 F CL 425 F
9 1.53 2.28 134.3 -2.16 -0.59 24.0 92 9 7 14 1 1 0 0  
10 1.20 2.28 180.1 -1.66 -0.48 22.1 83 14 13 11 8 2 1 0  MSE 299 A MSE 129 B MSE 133 B MSE 134 B MSE 172 B
CL 427 B
11 1.17 1.38 269.3 -1.66 -0.44 18.6 88 16 13 23 6 7 1 0  MSE 172 C MSE 243 C EDO 440 C MSE 172 D CL 420 E
12 1.42 1.56 37.4 -1.66 -0.60 7.0 74 1 1 4 2 2 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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