PDBsum entry 3puz Go to PDB code:  Tunnel analysis for: 3puz calculated with MOLE 2.0 PDB id 3puz Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.73 1.89 15.6 -1.16 -0.27 16.3 80 2 0 2 2 2 0 0   2 1.17 1.17 22.3 -1.62 -0.36 17.1 83 3 0 3 3 1 0 0   3 1.23 1.38 22.3 -0.48 -0.54 11.2 82 1 1 0 4 1 0 0   4 1.36 1.95 17.1 3.09 0.91 0.5 85 0 0 1 9 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.