PDBsum entry 3ppe Go to PDB code:  Tunnel analysis for: 3ppe calculated with MOLE 2.0 PDB id 3ppe Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.36 1.53 26.5 -0.84 -0.45 10.4 65 3 0 0 1 3 0 0   2 1.36 1.53 33.5 -0.96 -0.38 12.3 65 3 0 0 1 3 0 0   3 1.36 1.53 33.9 -0.98 -0.38 13.4 80 4 0 2 2 2 1 0   4 1.36 1.53 38.3 -1.05 -0.33 14.2 81 4 2 1 4 3 0 0   5 1.29 1.32 39.1 -0.99 -0.35 15.0 80 4 1 1 2 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.