 |
PDBsum entry 3po2
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 3po2 calculated with MOLE 2.0
|
PDB id
|
|
|
|
3po2
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
28 pores,
coloured by radius |
 |
30 pores,
coloured by radius
|
30 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.48 |
3.28 |
74.9 |
-1.83 |
-0.44 |
25.0 |
86 |
 |
10 |
4 |
4 |
5 |
1 |
2 |
0 |
 |
|
 |
 |
2 |
 |
2.69 |
2.69 |
78.4 |
-0.92 |
-0.52 |
10.8 |
79 |
4 |
1 |
1 |
4 |
1 |
2 |
0 |
DT 9 N DA 10 N DG 11 N DC 12 N DA 5 T DG 6 T DC 7 T DG 10 T DC 11 T DT 12 T DT 13 T
|
 |
3 |
 |
1.63 |
2.21 |
81.8 |
-1.26 |
-0.67 |
15.4 |
82 |
2 |
5 |
3 |
2 |
1 |
2 |
0 |
DT 9 N DA 10 N DG 11 N DC 12 N DG 10 T DC 11 T DT 12 T DT 13 T
|
 |
4 |
 |
1.84 |
3.24 |
82.4 |
-1.48 |
-0.55 |
21.1 |
84 |
4 |
4 |
5 |
4 |
0 |
2 |
0 |
DT 9 N DA 10 N DA 5 T DG 6 T DC 7 T DT 13 T
|
 |
5 |
 |
2.80 |
4.02 |
84.1 |
-2.47 |
-0.59 |
29.4 |
83 |
12 |
11 |
8 |
4 |
1 |
2 |
0 |
DC 12 N
|
 |
6 |
 |
1.74 |
3.35 |
132.7 |
-1.75 |
-0.50 |
22.1 |
85 |
11 |
9 |
9 |
9 |
0 |
3 |
0 |
DC 5 P DT 13 T DA 14 T
|
 |
7 |
 |
1.91 |
4.35 |
141.2 |
-1.72 |
-0.45 |
21.4 |
84 |
14 |
6 |
7 |
11 |
1 |
3 |
0 |
DA 0 N DA 1 N DG 11 N DC 12 N DC 5 P DG 10 T DC 11 T DT 12 T DT 13 T DA 14 T DC 15 T DC 16 T DT 17 T
|
 |
8 |
 |
1.63 |
2.24 |
143.5 |
-1.61 |
-0.52 |
23.1 |
84 |
9 |
10 |
5 |
7 |
1 |
1 |
0 |
DC 5 P DT 13 T DA 14 T
|
 |
9 |
 |
1.73 |
3.40 |
145.6 |
-2.03 |
-0.68 |
23.4 |
85 |
11 |
11 |
11 |
9 |
1 |
3 |
0 |
DA 5 N DA 6 N DG 7 N DT 13 T DA 14 T DC 15 T
|
 |
10 |
 |
2.10 |
2.10 |
149.7 |
-1.40 |
-0.45 |
20.2 |
82 |
11 |
6 |
3 |
9 |
1 |
1 |
0 |
DT 9 N DA 10 N DC 5 P DA 5 T DG 6 T DC 7 T DT 13 T DA 14 T
|
 |
11 |
 |
1.88 |
4.37 |
149.6 |
-1.64 |
-0.45 |
22.9 |
82 |
12 |
6 |
3 |
9 |
2 |
1 |
0 |
DA 0 N DA 1 N DG 11 N DC 12 N DC 5 P DG 10 T DC 11 T DT 12 T DT 13 T DA 14 T DC 15 T DC 16 T DT 17 T
|
 |
12 |
 |
2.25 |
4.02 |
151.6 |
-2.11 |
-0.48 |
26.9 |
84 |
15 |
11 |
8 |
8 |
1 |
4 |
0 |
|
 |
13 |
 |
1.21 |
2.83 |
156.3 |
-0.47 |
-0.18 |
12.7 |
83 |
7 |
3 |
5 |
10 |
4 |
1 |
0 |
DT 9 N DA 10 N DA 5 T DG 6 T DC 7 T DT 13 T DA 14 T
|
 |
14 |
 |
1.19 |
2.93 |
162.5 |
-1.00 |
-0.20 |
17.5 |
84 |
13 |
7 |
8 |
14 |
4 |
2 |
0 |
DC 5 P DA 14 T
|
 |
15 |
 |
1.44 |
1.63 |
169.6 |
-2.14 |
-0.64 |
28.1 |
84 |
19 |
20 |
10 |
9 |
0 |
2 |
0 |
DG 2 N
|
 |
16 |
 |
1.80 |
1.89 |
170.4 |
-1.78 |
-0.56 |
25.2 |
83 |
14 |
15 |
5 |
11 |
1 |
2 |
0 |
DA 0 N DG 2 N DG 11 N DC 12 N DG 10 T DC 11 T DT 12 T
|
 |
17 |
 |
1.19 |
2.36 |
171.8 |
-1.23 |
-0.29 |
19.9 |
84 |
17 |
10 |
11 |
9 |
4 |
1 |
0 |
DA 0 N DG 2 N
|
 |
18 |
 |
1.71 |
3.29 |
172.4 |
-1.81 |
-0.59 |
24.0 |
84 |
14 |
13 |
12 |
10 |
1 |
1 |
0 |
DA 6 N DG 7 N DT 13 T DA 14 T DC 15 T
|
 |
19 |
 |
1.22 |
1.20 |
173.9 |
-0.87 |
-0.18 |
18.0 |
84 |
11 |
7 |
7 |
12 |
5 |
0 |
0 |
DC 5 P DA 14 T
|
 |
20 |
 |
2.00 |
2.13 |
177.9 |
-1.52 |
-0.59 |
19.2 |
83 |
14 |
10 |
9 |
10 |
2 |
1 |
0 |
DA 6 N DG 7 N DT 9 N DA 10 N DG 11 N DC 12 N DG 10 T DC 11 T DT 12 T DT 13 T DA 14 T DC 15 T
|
 |
21 |
 |
2.87 |
3.89 |
179.5 |
-2.02 |
-0.55 |
25.6 |
84 |
20 |
12 |
10 |
9 |
1 |
1 |
0 |
DA 0 N DA 1 N DG 2 N DC 5 P DT 12 T DT 13 T DA 14 T DC 15 T DC 16 T DT 17 T
|
 |
22 |
 |
1.43 |
1.42 |
193.8 |
-1.80 |
-0.46 |
22.6 |
80 |
17 |
11 |
10 |
8 |
6 |
4 |
0 |
DA 0 N DG 11 N DC 12 N DG 10 T DC 11 T DT 12 T
|
 |
23 |
 |
1.48 |
1.67 |
198.4 |
-1.70 |
-0.58 |
22.9 |
83 |
18 |
14 |
6 |
14 |
0 |
3 |
0 |
DG 2 N DG 3 N DT 4 N DA 5 N DA 6 N DG 7 N DC 8 N DG 6 T DC 7 T DT 8 T DG 10 T
|
 |
24 |
 |
1.81 |
4.23 |
199.7 |
-1.30 |
-0.36 |
18.1 |
81 |
23 |
9 |
11 |
16 |
5 |
3 |
0 |
DA 0 N DG 2 N DG 11 N DC 12 N DC 14 P DC 15 P DC 17 P DC 18 P DC 19 P DG 10 T DC 11 T DT 12 T
|
 |
25 |
 |
1.40 |
1.42 |
217.3 |
-1.87 |
-0.51 |
24.1 |
82 |
15 |
15 |
14 |
7 |
5 |
3 |
0 |
DT 13 T DA 14 T
|
 |
26 |
 |
1.61 |
3.34 |
217.7 |
-1.81 |
-0.61 |
25.7 |
84 |
14 |
19 |
8 |
9 |
0 |
2 |
0 |
DA 0 N DA 1 N DG 2 N DT 12 T DT 13 T DA 14 T DC 15 T DC 16 T
|
 |
27 |
 |
1.30 |
1.60 |
223.4 |
-1.72 |
-0.48 |
22.0 |
81 |
17 |
11 |
12 |
9 |
5 |
3 |
0 |
DT 9 N DA 10 N DA 5 T DG 6 T DC 7 T DT 13 T DA 14 T
|
 |
28 |
 |
1.60 |
1.78 |
231.3 |
-1.74 |
-0.49 |
26.6 |
83 |
20 |
19 |
6 |
14 |
1 |
1 |
0 |
DA 0 N DA 1 N DG 2 N DC 5 P DT 12 T DT 13 T DA 14 T DC 15 T DC 16 T DT 17 T
|
 |
29 |
 |
1.38 |
1.38 |
237.0 |
-1.81 |
-0.43 |
24.4 |
82 |
21 |
15 |
12 |
11 |
6 |
2 |
0 |
DC 5 P DA 14 T
|
 |
30 |
 |
1.78 |
1.96 |
249.6 |
-1.55 |
-0.44 |
22.9 |
81 |
27 |
21 |
12 |
19 |
4 |
3 |
0 |
DG 2 N DC 14 P DC 15 P DC 17 P DC 18 P DC 19 P
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |