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PDBsum entry 3po2

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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 3po2 calculated with MOLE 2.0 PDB id
3po2
Pores calculated on whole structure Pores calculated excluding ligands

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28 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.48 3.28 74.9 -1.83 -0.44 25.0 86 10 4 4 5 1 2 0  
2 2.69 2.69 78.4 -0.92 -0.52 10.8 79 4 1 1 4 1 2 0  DT 9 N DA 10 N DG 11 N DC 12 N DA 5 T DG 6 T DC 7
T DG 10 T DC 11 T DT 12 T DT 13 T
3 1.63 2.21 81.8 -1.26 -0.67 15.4 82 2 5 3 2 1 2 0  DT 9 N DA 10 N DG 11 N DC 12 N DG 10 T DC 11 T DT
12 T DT 13 T
4 1.84 3.24 82.4 -1.48 -0.55 21.1 84 4 4 5 4 0 2 0  DT 9 N DA 10 N DA 5 T DG 6 T DC 7 T DT 13 T
5 2.80 4.02 84.1 -2.47 -0.59 29.4 83 12 11 8 4 1 2 0  DC 12 N
6 1.74 3.35 132.7 -1.75 -0.50 22.1 85 11 9 9 9 0 3 0  DC 5 P DT 13 T DA 14 T
7 1.91 4.35 141.2 -1.72 -0.45 21.4 84 14 6 7 11 1 3 0  DA 0 N DA 1 N DG 11 N DC 12 N DC 5 P DG 10 T DC
11 T DT 12 T DT 13 T DA 14 T DC 15 T DC 16 T DT
17 T
8 1.63 2.24 143.5 -1.61 -0.52 23.1 84 9 10 5 7 1 1 0  DC 5 P DT 13 T DA 14 T
9 1.73 3.40 145.6 -2.03 -0.68 23.4 85 11 11 11 9 1 3 0  DA 5 N DA 6 N DG 7 N DT 13 T DA 14 T DC 15 T
10 2.10 2.10 149.7 -1.40 -0.45 20.2 82 11 6 3 9 1 1 0  DT 9 N DA 10 N DC 5 P DA 5 T DG 6 T DC 7 T DT 13
T DA 14 T
11 1.88 4.37 149.6 -1.64 -0.45 22.9 82 12 6 3 9 2 1 0  DA 0 N DA 1 N DG 11 N DC 12 N DC 5 P DG 10 T DC
11 T DT 12 T DT 13 T DA 14 T DC 15 T DC 16 T DT
17 T
12 2.25 4.02 151.6 -2.11 -0.48 26.9 84 15 11 8 8 1 4 0  
13 1.21 2.83 156.3 -0.47 -0.18 12.7 83 7 3 5 10 4 1 0  DT 9 N DA 10 N DA 5 T DG 6 T DC 7 T DT 13 T DA 14
T
14 1.19 2.93 162.5 -1.00 -0.20 17.5 84 13 7 8 14 4 2 0  DC 5 P DA 14 T
15 1.44 1.63 169.6 -2.14 -0.64 28.1 84 19 20 10 9 0 2 0  DG 2 N
16 1.80 1.89 170.4 -1.78 -0.56 25.2 83 14 15 5 11 1 2 0  DA 0 N DG 2 N DG 11 N DC 12 N DG 10 T DC 11 T DT
12 T
17 1.19 2.36 171.8 -1.23 -0.29 19.9 84 17 10 11 9 4 1 0  DA 0 N DG 2 N
18 1.71 3.29 172.4 -1.81 -0.59 24.0 84 14 13 12 10 1 1 0  DA 6 N DG 7 N DT 13 T DA 14 T DC 15 T
19 1.22 1.20 173.9 -0.87 -0.18 18.0 84 11 7 7 12 5 0 0  DC 5 P DA 14 T
20 2.00 2.13 177.9 -1.52 -0.59 19.2 83 14 10 9 10 2 1 0  DA 6 N DG 7 N DT 9 N DA 10 N DG 11 N DC 12 N DG
10 T DC 11 T DT 12 T DT 13 T DA 14 T DC 15 T
21 2.87 3.89 179.5 -2.02 -0.55 25.6 84 20 12 10 9 1 1 0  DA 0 N DA 1 N DG 2 N DC 5 P DT 12 T DT 13 T DA 14
T DC 15 T DC 16 T DT 17 T
22 1.43 1.42 193.8 -1.80 -0.46 22.6 80 17 11 10 8 6 4 0  DA 0 N DG 11 N DC 12 N DG 10 T DC 11 T DT 12 T
23 1.48 1.67 198.4 -1.70 -0.58 22.9 83 18 14 6 14 0 3 0  DG 2 N DG 3 N DT 4 N DA 5 N DA 6 N DG 7 N DC 8 N
DG 6 T DC 7 T DT 8 T DG 10 T
24 1.81 4.23 199.7 -1.30 -0.36 18.1 81 23 9 11 16 5 3 0  DA 0 N DG 2 N DG 11 N DC 12 N DC 14 P DC 15 P DC
17 P DC 18 P DC 19 P DG 10 T DC 11 T DT 12 T
25 1.40 1.42 217.3 -1.87 -0.51 24.1 82 15 15 14 7 5 3 0  DT 13 T DA 14 T
26 1.61 3.34 217.7 -1.81 -0.61 25.7 84 14 19 8 9 0 2 0  DA 0 N DA 1 N DG 2 N DT 12 T DT 13 T DA 14 T DC
15 T DC 16 T
27 1.30 1.60 223.4 -1.72 -0.48 22.0 81 17 11 12 9 5 3 0  DT 9 N DA 10 N DA 5 T DG 6 T DC 7 T DT 13 T DA 14
T
28 1.60 1.78 231.3 -1.74 -0.49 26.6 83 20 19 6 14 1 1 0  DA 0 N DA 1 N DG 2 N DC 5 P DT 12 T DT 13 T DA 14
T DC 15 T DC 16 T DT 17 T
29 1.38 1.38 237.0 -1.81 -0.43 24.4 82 21 15 12 11 6 2 0  DC 5 P DA 14 T
30 1.78 1.96 249.6 -1.55 -0.44 22.9 81 27 21 12 19 4 3 0  DG 2 N DC 14 P DC 15 P DC 17 P DC 18 P DC 19 P

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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