PDBsum entry 3pmn Go to PDB code:  Tunnel analysis for: 3pmn calculated with MOLE 2.0 PDB id 3pmn Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.26 1.27 32.1 -1.79 -0.30 23.5 85 5 3 3 4 2 0 0  1GC 1 A MG 576 A 2 1.27 1.25 35.0 -1.70 -0.41 25.5 85 5 5 1 4 1 0 0  1GC 1 A MG 576 A DG 6 C 3 1.04 1.04 23.1 -0.33 -0.45 5.7 90 1 0 1 2 0 0 0  DA 8 B DC 9 B DT 10 B DG 11 B DG 3 C DT 4 C 4 1.04 1.04 28.0 -0.90 -0.63 5.2 93 1 0 1 1 0 0 0  DA 8 B DC 9 B DT 10 B DG 11 B DG 3 C DT 4 C 5 1.39 1.39 15.5 -0.82 0.10 22.3 84 2 2 0 2 1 0 0  DT 7 B DA 8 B DA 5 C DG 6 C Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.