spacer
spacer

PDBsum entry 3pjj

Go to PDB code: 
Top Page protein ligands metals links
Tunnel analysis for: 3pjj calculated with MOLE 2.0 PDB id
3pjj
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.87 11.5 -1.69 -0.16 14.4 92 3 0 4 1 1 1 0  
2 1.86 8.9 1.26 0.09 1.4 91 0 0 1 4 0 0 0  
3 2.20 7.2 -1.28 -0.47 22.2 67 2 1 0 2 0 0 0  
4 1.67 7.5 -1.32 -0.42 22.2 67 2 1 0 2 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
spacer
spacer