PDBsum entry 3pj0

Pore analysis for: 3pj0 calculated with

MOLE 2.0

PDB id

3pj0

Pores calculated on whole structure

Pores calculated excluding ligands

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with HETATM:

without HETATM:

0 pores, coloured by radius

10 pores, coloured by radius

10 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.34

2.34

47.3

-1.36

0.15

15.6

79

6

2

4

5

4

0

0

MRD 359 A

2

1.37

1.39

48.3

-1.68

-0.44

12.4

76

2

3

4

1

4

3

0

LLP 207 D MSE 259 D

3

0.96

4.10

27.0

-1.29

0.03

16.7

77

4

2

1

3

4

0

0

4

1.36

1.51

33.4

-1.39

-0.16

11.2

77

3

2

3

2

5

1

0

LLP 207 B MSE 259 B

5

1.35

1.54

36.8

-1.46

-0.43

12.4

79

3

4

3

1

3

1

0

LLP 207 B MSE 259 B

6

1.36

1.53

40.8

-1.47

-0.44

10.3

73

2

3

3

0

4

2

0

LLP 207 B MSE 259 B

7

1.87

1.97

28.4

-1.71

-0.42

18.0

79

2

2

1

3

2

1

0

8

1.27

1.63

29.9

-1.74

-0.41

14.7

79

3

2

3

2

4

1

0

LLP 207 C MSE 259 C

9

1.26

1.63

40.5

-1.48

-0.45

11.2

75

2

2

3

1

4

2

0

LLP 207 C MSE 259 C

10

1.86

1.86

53.4

-1.53

0.00

17.5

76

6

1

2

5

4

1

0

MRD 365 C

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.