PDBsum entry 3pfv Go to PDB code:  Tunnel analysis for: 3pfv calculated with MOLE 2.0 PDB id 3pfv Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 18 tunnels, coloured by tunnel radius 18 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.31 1.41 38.7 0.24 0.15 11.4 74 4 0 1 7 4 0 1  PTR 1069 D 2 1.41 1.72 41.6 -0.45 -0.04 16.0 78 6 1 2 8 3 0 0  EDO 8 A SO4 5 B 3 1.44 1.74 43.4 -0.52 -0.01 16.2 77 5 2 2 7 4 0 0  EDO 8 A SO4 5 B 4 1.39 1.54 46.9 -0.44 -0.04 14.5 77 5 1 2 8 3 1 0  EDO 8 A SO4 5 B 5 1.42 1.55 55.3 -0.73 -0.10 18.7 78 6 3 3 8 3 0 0  EDO 9 A SO4 5 B 6 1.40 1.55 57.4 -0.97 -0.14 19.7 77 8 4 3 7 4 0 0  EDO 9 A SO4 5 B 7 1.42 1.54 61.6 -0.92 -0.06 19.6 78 8 6 4 7 4 1 0  EDO 9 A SO4 5 B 8 1.43 1.73 62.2 -1.27 -0.08 24.4 79 12 3 3 7 3 0 0  EDO 9 A SO4 5 B 9 1.43 1.54 65.6 -1.02 -0.01 21.7 78 10 3 3 8 5 0 0  EDO 9 A EDO 10 A SO4 5 B PG4 11 B 10 1.42 1.55 66.3 -1.29 -0.11 21.3 79 10 4 5 8 4 0 0  EDO 9 A EDO 10 A SO4 5 B PG4 11 B 11 1.31 1.53 84.8 -0.26 0.09 15.5 77 11 2 3 11 6 1 1  EDO 9 A SO4 5 B PG4 11 B PTR 1069 C 12 1.93 2.13 19.2 0.48 -0.05 6.7 86 1 1 2 5 2 0 0   13 1.43 1.56 20.1 0.51 -0.03 6.1 90 1 1 2 6 2 0 0   14 1.90 2.08 21.9 0.39 -0.01 4.7 87 1 1 2 5 2 0 0   15 1.42 1.85 22.8 0.34 -0.04 4.7 90 1 1 2 6 2 0 0   16 1.89 1.89 27.5 -0.13 -0.19 9.5 89 1 1 3 5 1 0 0   17 1.40 1.89 28.8 0.08 -0.14 8.2 92 1 1 3 6 1 0 0   18 1.28 1.28 19.5 -1.12 -0.61 5.1 70 2 0 3 1 2 1 0  SO4 1 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.