PDBsum entry 3pe3 Go to PDB code:  Tunnel analysis for: 3pe3 calculated with MOLE 2.0 PDB id 3pe3 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.44 1.56 47.1 -0.66 -0.04 12.8 72 4 1 1 4 5 4 0  UDP 1201 C 2 1.32 1.31 47.6 -0.67 -0.13 12.4 75 4 1 1 4 5 4 0  UDP 1201 A 3 1.31 1.31 66.4 -1.60 -0.29 21.4 80 12 5 6 4 4 2 0  UDP 1201 A 4 1.41 1.56 67.0 -1.57 -0.20 21.8 79 13 5 6 5 4 2 0  UDP 1201 C 5 1.38 1.51 48.5 -0.55 -0.08 12.3 77 4 1 2 6 5 4 0  UDP 1201 B 6 1.38 1.51 67.4 -1.58 -0.23 20.9 79 12 6 6 5 4 2 0  UDP 1201 B 7 1.35 1.35 30.3 -0.29 0.05 9.9 75 4 0 1 3 4 2 0  UDP 1201 D 8 1.20 1.63 26.4 -0.70 -0.36 10.5 86 2 1 2 4 1 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.