spacer
spacer

PDBsum entry 3pdo

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) links
Protein chain A PDB id
3pdo
Protein chain A highlighted
(click to view)
 
Jmol
Motifs
Secondary structure
Wiring diagram
Residue conservation
ProMotif
4 sheets
7 beta hairpins
5 beta bulges
14 strands
2 helices
1 helix-helix interac
18 beta turns
1 gamma turn
1 disulphide
PROSITE
IG_MHC
Chain 185 a.a.
Chain 191 a.a.
Chain 17 a.a.
  
Chain (185 residues)

UniProt code: P01903 (DRA_HUMAN)   [Pfam]

structural classification (2 domains) :
Domain Links CATH no.   Class Architecture
1 3.10.320.10 = Alpha Beta Roll
2 2.60.40.10 = Mainly Beta Sandwich

Key:  
Sec. struc: Helices labelled H1, H2, ... and strands by their sheets A, B, ...
  Helix Strand  
Motifs:   
    beta turn     gamma turn     beta hairpin
Disulphides:   
    disulphide bond
Residue contacts:   
    to ligand
PDB SITE records:   
 AC1  AC2  AC3
PROSITE patterns:   
Low   High conservation

Jmol
RasMol

FASTA
file
Domain 1
Topology diagram


Hera


Domain 2
Topology diagram


Hera


  Analysis of sequence's residue conservation
  Related protein sequences in the PDB
  
spacer
spacer