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PDBsum entry 3pdo

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Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 3pdo calculated with MOLE 2.0 PDB id
3pdo
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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12 tunnels, coloured by tunnel radius 10 tunnels, coloured by tunnel radius 10 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.69 15.8 0.23 -0.10 1.9 83 0 0 4 2 2 1 0  
2 1.77 18.7 0.27 -0.12 2.4 80 1 0 4 2 2 1 0  
3 1.72 22.5 -0.12 0.11 5.7 77 0 1 3 3 3 2 0  
4 1.55 23.6 -0.79 -0.30 6.5 86 0 1 3 2 1 1 0  
5 1.30 12.2 0.20 0.13 7.9 69 1 0 1 3 1 1 0  
6 1.30 14.2 -0.19 0.06 10.0 69 1 0 1 4 1 0 0  
7 2.23 4.4 -0.40 -0.33 16.5 89 1 1 0 3 0 0 0  
8 1.64 8.6 -2.22 -0.42 16.0 64 1 1 1 1 2 1 0  
9 1.58 6.0 -0.14 0.10 4.3 73 0 1 1 1 2 0 0  
10 1.32 7.7 -0.07 0.17 11.9 83 0 1 1 2 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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