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PDBsum entry 3pdo

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Top Page protein ligands Protein-protein interface(s) clefts links
Cleft analysis for: 3pdo PDB id
3pdo
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
 residue conservation
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 4774.36 1.66 65.75 2 10.49 2 16.37 1 16 14 15 22 9 9 0 GOL 199[B] (2 atoms)
2 2874.23 0.00 61.69 5 8.05 6 10.76 2 9 10 9 16 8 6 0 GOL 193[A] (6 atoms)
3 2499.19 0.00 63.44 3 10.56 1 9.30 3 7 9 8 9 5 5 0  
4 787.64 0.00 61.29 7 9.07 3 7.15 7 2 1 4 7 3 1 0  
5 539.58 0.00 67.57 1 7.27 7 8.08 4 3 3 2 3 1 6 0  
6 474.61 0.00 62.96 4 8.18 4 6.08 10 3 1 3 1 2 2 0  
7 469.12 0.00 61.33 6 6.19 8 7.43 5 2 1 3 3 2 4 0  
8 502.88 0.00 57.64 8 6.11 9 6.56 9 2 2 2 4 1 2 0  
9 406.27 0.00 55.57 10 5.67 10 7.17 6 3 1 3 2 3 0 0  
10 738.70 0.00 55.92 9 8.16 5 6.99 8 4 3 2 4 2 2 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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