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PDBsum entry 3p9q

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Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 3p9q calculated with MOLE 2.0 PDB id
3p9q
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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14 tunnels, coloured by tunnel radius 17 tunnels, coloured by tunnel radius 17 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.40 24.3 -2.24 -0.58 25.5 88 5 2 3 1 1 0 0  
2 1.27 14.1 -0.15 -0.07 17.5 75 1 2 1 2 3 0 0  
3 1.25 19.2 -1.00 -0.11 24.3 75 3 3 1 2 2 0 0  
4 1.28 19.2 -0.77 -0.10 25.6 74 3 2 1 2 2 0 0  
5 3.03 8.0 -2.69 -0.30 30.5 70 3 1 0 0 1 0 0  
6 2.96 8.2 -2.35 -0.27 26.3 70 3 1 0 0 1 0 0  
7 1.97 9.2 -2.10 -0.04 19.9 70 4 0 0 0 1 1 0  
8 2.99 10.6 -1.46 -0.52 15.3 79 2 1 1 0 1 0 0  
9 2.93 10.8 -1.47 -0.50 15.5 79 2 1 1 0 1 0 0  
10 1.97 11.0 -1.27 -0.39 11.5 78 3 0 1 0 1 1 0  
11 1.51 6.7 -2.14 -0.80 26.6 79 1 2 1 1 0 0 0  
12 1.45 7.9 -0.53 -0.30 18.0 74 2 1 0 3 0 0 0  
13 2.01 5.5 -0.36 -0.52 2.8 56 0 0 0 2 0 1 0  
14 1.39 8.1 1.04 -0.11 2.0 78 0 0 0 3 0 1 0  
15 1.91 3.1 -0.49 -0.53 2.8 56 0 0 0 1 0 1 0  
16 1.39 8.5 1.18 -0.05 1.8 78 0 0 0 3 0 1 0  
17 1.68 9.5 -0.38 -0.15 19.9 69 2 1 0 2 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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