PDBsum entry 3p9m Go to PDB code:  Tunnel analysis for: 3p9m calculated with MOLE 2.0 PDB id 3p9m Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.22 2.25 17.9 -1.03 0.16 9.8 68 2 0 1 2 2 2 0   2 1.19 2.23 20.7 -0.73 -0.01 11.2 65 3 0 1 2 2 1 0   3 1.61 1.68 18.7 0.64 0.31 5.4 75 2 0 0 3 4 1 0   4 1.15 1.24 19.6 1.26 0.58 4.9 70 1 0 0 4 2 1 2   5 1.19 1.39 15.0 0.45 0.27 8.5 77 0 1 2 2 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.