spacer
spacer

PDBsum entry 3p9k

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 3p9k calculated with MOLE 2.0 PDB id
3p9k
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
13 tunnels, coloured by tunnel radius 12 tunnels, coloured by tunnel radius 12 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.59 9.1 -2.70 -0.64 31.6 76 3 1 1 0 1 0 0  
2 1.61 11.4 -2.63 -0.33 28.2 72 3 1 1 0 2 0 0  
3 1.53 16.8 -2.69 -0.29 29.2 74 4 1 1 0 2 0 0  
4 1.37 15.7 -2.72 -0.40 33.4 73 3 2 1 1 2 0 0  
5 1.77 10.4 -2.97 -0.63 36.7 77 3 2 1 0 1 0 0  
6 1.71 11.2 -2.78 -0.30 31.4 72 4 1 1 0 2 0 0  
7 1.75 7.5 0.86 0.12 13.6 72 0 1 0 3 0 0 0  
8 1.43 7.0 -1.14 -0.38 15.5 80 1 1 0 1 1 0 0  
9 1.41 7.0 -1.46 -0.30 19.8 80 1 1 0 1 1 0 0  
10 1.58 11.1 -3.15 -0.66 39.0 78 4 2 1 0 1 0 0  
11 2.36 4.6 -0.21 -0.66 2.9 79 0 0 0 1 0 1 0  
12 1.79 7.5 0.56 -0.05 7.3 83 1 0 1 2 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
spacer
spacer