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PDBsum entry 3p72

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protein metals Protein-protein interface(s) links
Blood clotting/inhibitor PDB id
3p72

 

 

 

 

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Contents
Protein chains
269 a.a. *
11 a.a. *
Metals
_CL
Waters ×218
* Residue conservation analysis
PDB id:
3p72
Name: Blood clotting/inhibitor
Title: Structure of platelet glycoprotein 1b alpha with a bound peptide inhibitor
Structure: Platelet glycoprotein ib alpha chain. Chain: a. Fragment: unp residues 17-281. Synonym: gp-ib alpha, gpib-alpha, gpiba, glycoprotein ibalpha, antigen cd42b-alpha, glycocalicin. Engineered: yes. Os1 peptide. Chain: b. Engineered: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: gp1ba. Expressed in: homo sapiens. Expression_system_taxid: 9606. Expression_system_cell_line: hek 293. Synthetic: yes. Other_details: chemical synthesis identified by phage display
Resolution:
1.90Å     R-factor:   0.221     R-free:   0.286
Authors: P.A.Mcewan,R.K.Andrews,J.Emsley
Key ref: P.A.McEwan et al. (2009). Glycoprotein Ibalpha inhibitor complex structure reveals a combined steric and allosteric mechanism of von Willebrand factor antagonism. Blood, 114, 4883-4885. PubMed id: 19726719
Date:
12-Oct-10     Release date:   24-Nov-10    
PROCHECK
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 Headers
 References

Protein chain
Pfam   ArchSchema ?
P07359  (GP1BA_HUMAN) -  Platelet glycoprotein Ib alpha chain from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
652 a.a.
269 a.a.*
Protein chain
No UniProt id for this chain
Struc: 11 a.a.
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 6 residue positions (black crosses)

 

 
Blood 114:4883-4885 (2009)
PubMed id: 19726719  
 
 
Glycoprotein Ibalpha inhibitor complex structure reveals a combined steric and allosteric mechanism of von Willebrand factor antagonism.
P.A.McEwan, R.K.Andrews, J.Emsley.
 
  ABSTRACT  
 
Platelet glycoprotein Ibalpha (GpIbalpha) interactions with von Willebrand factor (VWF) are a critical early event in platelet adhesion, which contributes to hemostasis and thrombosis. Here we report the structure of a complex between GpIbalpha and a potent peptide inhibitor. The cyclic peptide (CTERMALHNLC) was isolated from a cysteine-constrained phage display library, and in the complex this forms one and a half turns of an amphipathic alpha-helix, the curvature of which facilitates contacts with the curved concave face of the GpIbalpha leucine-rich repeats. The peptide has only limited overlap with the VWF binding site. It effectively inhibits by stabilizing an alternative alpha-helical conformation of a regulatory loop that forms an extended beta-hairpin upon VWF binding. The structure defines a previously unrecognized binding site within GpIbalpha and represents a clear strategy for developing antiplatelet agents targeting the GpIbalpha-VWF interaction allosterically.
 

Literature references that cite this PDB file's key reference

  PubMed id Reference
19965694 J.A.López, and A.Munday (2009).
The proof is in the crystal.
  Blood, 114, 4757-4758.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time.

 

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