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PDBsum entry 3p4f

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Transcription PDB id
3p4f

 

 

 

 

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Contents
Protein chain
304 a.a. *
Ligands
GLU-GLU-VAL-ASP-
VAL-THR-SER-VAL-
TYR
GLY-ALA-ALA-ARG-
ALA-GLU-VAL-HIS-
LEU
Waters ×244
* Residue conservation analysis
PDB id:
3p4f
Name: Transcription
Title: Structural and biochemical insights into mll1 core complex assembly and regulation.
Structure: Wd repeat-containing protein 5. Chain: a. Fragment: unp residues 1-308. Synonym: bmp2-induced 3-kb gene protein. Engineered: yes. Retinoblastoma-binding protein 5. Chain: b. Fragment: unp residues 371-381. Synonym: rbbp-5, retinoblastoma-binding protein rbq-3.
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: wdr5, big3. Expressed in: escherichia coli. Expression_system_taxid: 562. Synthetic: yes. Other_details: synthetic peptide (new england peptide). Other_details: synthetic peptide (new england peptide)
Resolution:
2.35Å     R-factor:   0.197     R-free:   0.249
Authors: V.Avdic,P.Zhang,S.Lanouette,A.Groulx,V.Tremblay,J.B.Brunzelle,J.- F.Couture
Key ref: V.Avdic et al. (2011). Structural and biochemical insights into MLL1 core complex assembly. Structure, 19, 101-108. PubMed id: 21220120
Date:
06-Oct-10     Release date:   08-Dec-10    
PROCHECK
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 Headers
 References

Protein chain
Pfam   ArchSchema ?
P61964  (WDR5_HUMAN) -  WD repeat-containing protein 5 from Homo sapiens
Seq:
Struc:
334 a.a.
304 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.2.1.1.43  - Transferred entry: 2.1.1.354.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: S-adenosyl-L-methionine + L-lysine-[histone] = S-adenosyl-L-homocysteine + N6-methyl-L-lysine-[histone]
S-adenosyl-L-methionine
+ L-lysine-[histone]
= S-adenosyl-L-homocysteine
+ N(6)-methyl-L-lysine-[histone]
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    Added reference    
 
 
Structure 19:101-108 (2011)
PubMed id: 21220120  
 
 
Structural and biochemical insights into MLL1 core complex assembly.
V.Avdic, P.Zhang, S.Lanouette, A.Groulx, V.Tremblay, J.Brunzelle, J.F.Couture.
 
  ABSTRACT  
 
No abstract given.

 

Literature references that cite this PDB file's key reference

  PubMed id Reference
21642971 S.Sarvan, V.Avdic, V.Tremblay, C.P.Chaturvedi, P.Zhang, S.Lanouette, A.Blais, J.S.Brunzelle, M.Brand, and J.F.Couture (2011).
Crystal structure of the trithorax group protein ASH2L reveals a forkhead-like DNA binding domain.
  Nat Struct Mol Biol, 18, 857-859.
PDB code: 3s32
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB code is shown on the right.

 

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