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PDBsum entry 3oye

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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 3oye calculated with MOLE 2.0 PDB id
3oye
Pores calculated on whole structure Pores calculated excluding ligands

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2 pores, coloured by radius 2 pores, coloured by radius 2 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.34 1.51 120.4 -1.67 -0.36 19.6 78 7 1 1 3 2 4 0  ZYY 398 A DT 8 C DG 9 C DT 8 D DT 9 D DA 15 D DC
16 D DA 17 D
2 1.29 3.04 235.6 -0.58 -0.08 15.6 77 9 6 7 19 5 6 0  GOL 801 A DC 6 C DA 7 C DT 8 C DG 9 C DT 8 D DT 9
D DC 10 D DC 11 D DA 12 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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