spacer
spacer

PDBsum entry 3omi

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 3omi calculated with MOLE 2.0 PDB id
3omi
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
16 tunnels, coloured by tunnel radius 18 tunnels, coloured by tunnel radius 18 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.46 57.7 0.33 0.41 12.3 81 7 3 0 14 5 2 0  2 HEA C
2 1.43 60.6 1.20 0.66 6.7 75 4 1 1 15 8 1 0  2 HEA C,552 HEA C
3 1.43 14.9 0.64 0.58 16.2 78 2 1 0 5 3 0 0  3 TRD D
4 1.42 17.0 0.43 0.56 16.6 78 2 1 0 5 4 0 0  3 TRD D
5 1.42 22.7 1.31 0.64 8.6 84 2 1 0 8 4 0 0  3 TRD D
6 1.32 6.1 2.08 1.03 1.2 77 0 0 0 4 2 0 0  
7 1.55 9.4 0.04 0.01 13.0 85 2 0 0 3 0 2 0  
8 1.73 9.7 -2.53 -0.69 35.6 71 1 2 0 1 0 1 0  
9 1.74 10.0 -1.57 -0.57 23.8 76 1 3 0 2 0 1 0  
10 1.75 9.3 -0.72 -0.22 17.0 81 2 1 0 3 1 2 0  
11 1.74 43.6 -1.76 -0.51 25.0 76 3 4 1 3 2 3 0  
12 2.08 16.2 -1.13 -0.06 18.6 73 1 2 0 1 3 2 0  
13 2.04 18.4 -1.28 -0.14 23.1 77 2 2 0 2 3 1 0  
14 1.57 10.7 -2.00 -0.75 11.0 90 1 1 4 1 0 0 0  
15 2.26 5.9 0.56 0.83 1.2 63 0 0 0 2 3 1 0  
16 2.08 7.1 -0.11 0.58 1.3 66 0 0 0 2 2 1 0  
17 1.73 5.0 -0.65 -0.53 12.2 94 0 1 2 1 0 0 0  
18 1.89 7.1 -1.32 -0.70 13.6 86 0 1 1 1 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
spacer
spacer