PDBsum entry 3olu

Pore analysis for: 3olu calculated with

MOLE 2.0

PDB id

3olu

Pores calculated on whole structure

Pores calculated excluding ligands

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11 pores, coloured by radius

13 pores, coloured by radius

13 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.64

1.64

25.2

-1.91

-0.72

4.2

70

1

0

4

0

2

2

0

2

1.15

1.41

26.5

-1.18

-0.24

13.2

83

2

3

2

2

1

1

0

EDO 704 B

3

1.22

1.33

29.7

-1.27

-0.21

16.7

85

2

4

2

2

1

0

0

4

1.42

2.27

38.9

-1.54

-0.34

17.7

81

4

2

3

3

3

1

0

EDO 707 A

5

1.46

1.46

39.2

-1.16

-0.38

11.5

75

4

3

5

3

3

1

2

6

1.68

1.73

39.3

-1.57

-0.39

14.1

73

3

3

5

3

1

2

2

7

1.49

1.49

39.4

-1.23

-0.40

13.8

77

4

3

5

2

2

1

2

8

1.24

1.23

50.3

-1.28

-0.44

13.0

76

5

4

5

2

3

1

1

9

1.20

1.20

52.1

-1.46

-0.47

14.5

76

5

5

5

4

2

3

1

EDO 704 B

10

1.21

1.21

52.0

-1.19

-0.45

12.6

77

5

5

5

4

4

2

1

EDO 704 B

11

1.19

1.22

59.8

0.46

-0.04

5.2

78

3

1

4

9

5

1

0

EDO 707 A 1AG 708 A EDO 706 B

12

1.16

1.24

69.6

0.44

0.02

6.9

79

6

1

7

10

6

1

0

EDO 701 B EDO 706 B 1AG 708 B

13

1.24

1.87

75.8

-0.82

-0.18

16.9

77

7

4

7

6

4

0

0

EDO 706 B NAG 1 D NAG 1 F

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.