PDBsum entry 3ol2

Pore analysis for: 3ol2 calculated with

MOLE 2.0

PDB id

3ol2

Pores calculated on whole structure

Pores calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

10 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.25

2.53

28.9

-0.62

-0.32

15.5

82

3

1

1

4

0

1

0

2

1.51

1.66

37.2

-0.57

-0.30

11.7

78

3

1

1

4

0

3

0

3

1.20

2.03

60.5

-2.68

-0.38

32.1

81

7

2

3

3

1

1

0

4

1.21

2.08

63.7

-1.93

-0.53

19.0

88

4

3

7

1

2

1

0

5

1.62

1.70

68.2

-1.73

-0.20

19.5

81

7

7

6

3

4

1

0

6

1.85

4.10

76.4

-2.42

-0.59

28.6

81

8

8

6

2

4

2

0

NAG 1 G NAG 2 G

7

1.90

2.38

79.0

-2.20

-0.47

22.8

83

5

4

6

2

2

4

0

8

1.12

1.45

79.7

-1.47

-0.40

17.7

82

4

2

3

2

3

1

0

9

1.83

2.95

98.2

-1.85

-0.48

18.4

81

8

7

8

4

2

2

0

NAG 1 F NAG 2 F

10

1.57

1.65

110.2

-1.18

-0.24

11.0

79

9

7

10

7

6

5

0

NAG 2 F

11

1.19

1.49

113.9

-1.77

-0.30

16.4

76

4

2

4

2

4

4

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.