PDBsum entry 3oks

Tunnel analysis for: 3oks calculated with

MOLE 2.0

PDB id

3oks

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

9 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.20

1.32

52.4

-0.98

-0.32

11.2

83

4

2

6

3

6

2

0

LLP 292 D FMT 460 D EDO 485 D

2

1.21

1.39

50.9

-0.84

-0.27

10.1

83

4

2

6

3

6

2

0

LLP 292 A FMT 460 A

3

1.20

1.36

16.9

0.26

0.26

16.8

75

2

2

0

3

1

1

1

4

1.19

1.44

15.1

0.27

0.26

17.2

77

2

2

0

4

1

1

1

5

1.21

1.51

21.9

-0.23

0.17

21.1

76

3

2

0

4

1

1

1

6

1.51

2.01

15.8

-0.98

-0.54

16.6

91

2

2

0

1

0

0

0

FMT 465 C

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.