 |
PDBsum entry 3oj2
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 3oj2 calculated with  MOLE 2.0
|
PDB id
|
|
|
|
3oj2
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
6 pores,
coloured by radius |
|
6 pores,
coloured by radius
|
6 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.75 |
2.03 |
28.0 |
-1.64 |
-0.17 |
16.2 |
87 |
|
4 |
1 |
5 |
2 |
1 |
0 |
0 |
|
|
 |
|
2 |
 |
2.11 |
3.53 |
31.8 |
-1.70 |
-0.36 |
23.8 |
75 |
4 |
2 |
1 |
2 |
3 |
0 |
0 |
|
|
3 |
 |
1.55 |
4.69 |
32.3 |
-1.76 |
0.10 |
21.4 |
74 |
5 |
1 |
4 |
4 |
2 |
1 |
0 |
|
|
4 |
 |
1.55 |
4.52 |
36.9 |
-1.93 |
-0.08 |
21.6 |
84 |
5 |
2 |
4 |
2 |
2 |
1 |
0 |
|
|
5 |
 |
1.54 |
4.65 |
39.9 |
-1.25 |
-0.10 |
14.0 |
84 |
4 |
2 |
6 |
6 |
1 |
1 |
0 |
|
 |
6 |
 |
2.11 |
3.53 |
68.6 |
-0.84 |
-0.01 |
12.4 |
79 |
6 |
3 |
4 |
5 |
4 |
2 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program