PDBsum entry 3ohm

Pore analysis for: 3ohm calculated with

MOLE 2.0

PDB id

3ohm

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

6 pores, coloured by radius

10 pores, coloured by radius

10 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.18

1.34

30.9

-0.17

0.10

8.1

82

1

1

3

4

2

1

0

2

1.35

1.38

39.9

-1.82

-0.49

18.8

84

6

3

5

3

1

1

0

3

1.36

1.35

45.8

-1.99

-0.61

20.6

81

6

4

5

5

1

1

0

4

1.35

1.35

48.3

-2.40

-0.57

22.4

84

6

4

6

4

2

2

0

5

1.72

1.92

73.4

-1.89

-0.53

23.2

77

4

7

7

3

2

3

1

6

1.14

1.14

74.0

-1.71

-0.39

15.5

79

7

3

6

3

3

3

1

GDP 400 A

7

1.14

1.14

92.1

-1.35

-0.39

15.2

78

8

4

8

7

3

4

1

8

1.73

1.97

99.7

-1.37

-0.33

16.9

79

5

6

9

8

3

7

1

9

1.88

2.87

132.8

-1.01

-0.31

17.7

84

8

7

8

7

3

1

0

GDP 400 A

10

1.84

2.97

26.7

-1.59

-0.35

22.1

81

5

4

1

2

1

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.