spacer
spacer

PDBsum entry 3oe7

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 3oe7 calculated with MOLE 2.0 PDB id
3oe7
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
20 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.32 2.23 63.0 -1.64 -0.32 21.4 85 5 8 6 6 1 1 0  
2 1.58 1.71 78.4 -1.49 -0.35 16.9 80 8 4 8 6 5 4 0  
3 2.67 2.87 88.9 -1.43 -0.58 14.6 86 6 8 12 7 1 0 0  
4 1.55 1.72 92.4 -1.27 -0.42 15.4 85 8 5 8 12 3 4 0  ANP 600 L MG 700 L
5 1.61 1.90 111.6 -1.13 -0.36 18.3 84 8 11 5 11 1 4 0  
6 1.54 1.55 123.3 -1.65 -0.56 19.5 83 8 10 9 11 6 1 0  ANP 600 L MG 700 L
7 1.23 1.25 124.3 -1.35 -0.38 19.7 81 8 12 7 17 5 3 0  
8 1.44 1.44 134.3 -1.36 -0.45 20.4 82 9 15 6 10 4 2 0  
9 3.15 3.10 133.7 -1.52 -0.49 17.5 84 9 10 12 7 3 3 0  
10 2.40 2.40 140.0 -2.18 -0.75 21.7 84 10 16 11 3 2 0 0  
11 1.45 2.18 154.6 -1.30 -0.48 14.9 83 9 15 15 13 5 1 0  
12 2.20 2.85 154.7 -2.02 -0.58 25.9 83 15 16 11 9 2 2 0  
13 1.20 1.54 159.9 -1.27 -0.48 14.5 83 10 9 12 10 6 0 0  
14 2.29 2.31 164.0 -2.20 -0.71 22.7 84 11 17 16 6 3 1 0  
15 2.82 2.85 169.1 -1.78 -0.56 20.3 82 13 19 14 11 6 1 0  ANP 600 K
16 1.22 1.25 192.5 -1.46 -0.44 19.3 81 13 15 11 16 6 6 0  
17 1.26 1.40 189.5 -1.48 -0.39 20.1 83 16 15 18 17 6 0 0  
18 1.48 2.29 191.6 -1.40 -0.36 20.6 79 13 14 9 12 3 5 0  
19 1.58 1.76 206.1 -1.43 -0.43 20.2 81 16 22 15 19 7 2 0  ANP 600 K
20 2.15 2.88 200.5 -1.75 -0.51 21.5 84 17 16 15 16 3 1 0  
21 1.59 1.85 207.0 -1.56 -0.52 18.3 84 17 20 16 15 5 3 0  ANP 600 K
22 1.30 1.54 220.7 -1.80 -0.52 21.6 80 19 15 10 10 3 4 0  
23 2.19 3.00 219.9 -1.87 -0.56 21.6 82 22 21 16 14 6 1 0  ANP 600 K
24 1.36 1.34 229.8 -1.66 -0.55 20.1 83 18 25 17 14 8 1 0  ANP 600 K
25 2.21 2.90 227.9 -1.92 -0.57 22.8 82 22 20 15 13 4 1 0  ANP 600 K
26 2.37 2.30 238.9 -1.77 -0.54 20.7 84 19 22 21 18 6 0 0  ANP 600 K
27 1.41 1.42 237.7 -1.72 -0.56 21.3 83 18 24 16 13 6 1 0  ANP 600 K
28 1.29 1.74 246.2 -1.11 -0.37 16.5 81 17 13 15 19 7 2 0  
29 2.84 4.36 248.5 -1.74 -0.54 19.3 84 20 23 24 21 8 0 0  ANP 600 K
30 1.57 1.67 333.9 -1.55 -0.47 19.6 83 25 26 28 29 9 2 0  ANP 600 K

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer