PDBsum entry 3oay Go to PDB code:  Tunnel analysis for: 3oay calculated with MOLE 2.0 PDB id 3oay Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.78 3.16 28.4 -0.97 -0.74 4.5 102 1 1 8 1 0 0 0   2 1.81 3.08 36.9 -0.98 -0.75 6.6 101 2 2 10 2 0 0 0   3 1.80 3.06 41.0 -0.95 -0.70 7.8 97 3 3 12 3 0 0 0   4 1.85 3.20 43.6 -0.91 -0.75 7.6 98 2 4 12 4 0 0 0   5 1.90 3.24 51.5 -0.33 -0.49 4.9 91 3 0 9 5 1 1 0   6 1.22 1.56 16.8 -0.46 -0.23 9.7 69 1 1 0 3 1 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.