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PDBsum entry 3o9j

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Tunnel analysis for: 3o9j calculated with MOLE 2.0 PDB id
3o9j
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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12 tunnels, coloured by tunnel radius 12 tunnels, coloured by tunnel radius 12 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.69 7.1 0.44 0.37 8.8 58 1 0 0 2 1 0 2  
2 1.90 7.4 -1.88 -0.20 21.0 73 1 1 0 0 1 0 0  
3 1.73 9.2 -1.72 -0.39 20.5 76 2 1 0 0 1 1 0  
4 1.81 16.3 -1.79 0.09 24.4 79 3 2 0 1 1 0 0  
5 1.72 18.1 -1.70 -0.08 22.7 80 4 2 0 1 1 0 0  
6 1.38 10.3 0.97 0.22 7.9 74 1 0 1 4 0 1 1  
7 1.34 11.5 -0.34 -0.24 15.2 70 1 2 0 1 0 1 2  
8 2.30 7.5 -0.42 -0.46 2.9 74 0 0 2 0 1 1 0  
9 1.50 10.2 0.35 0.37 2.6 83 0 1 1 3 1 1 0  
10 1.85 8.1 -1.76 -0.60 12.0 71 1 2 1 0 1 0 0  
11 1.75 13.6 -1.68 -0.70 14.7 71 1 3 1 0 1 0 0  
12 1.76 5.1 0.10 -0.10 13.3 96 1 0 0 3 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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