PDBsum entry 3o4x

Pore analysis for: 3o4x calculated with

MOLE 2.0

PDB id

3o4x

Pores calculated on whole structure

Pores calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

17 pores, coloured by radius

17 pores, coloured by radius

17 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

3.82

4.26

27.5

-2.31

-0.51

30.9

79

6

5

3

2

1

1

0

2

2.58

4.59

49.3

-2.28

-0.54

31.8

80

7

6

3

2

1

0

0

3

3.00

3.56

57.0

-2.61

-0.75

30.8

83

8

8

5

0

1

0

0

4

2.86

2.96

63.1

-1.74

-0.53

25.1

85

7

13

4

5

1

0

0

5

2.92

4.85

65.4

-1.70

-0.31

19.7

83

8

5

7

6

1

1

0

6

1.53

1.63

69.2

-2.11

-0.35

27.3

84

8

6

5

3

2

0

0

7

1.78

1.79

74.0

-2.54

-0.50

31.9

82

10

8

5

2

1

1

1

8

3.28

5.69

75.4

-3.24

-0.66

36.5

80

11

11

5

2

0

1

0

9

2.85

2.94

77.6

-1.77

-0.55

26.8

85

8

14

5

4

0

0

0

10

1.17

1.36

83.6

-1.04

-0.38

19.3

77

6

8

2

8

2

4

0

11

2.75

4.63

86.4

-2.55

-0.63

31.6

82

11

10

8

2

2

0

0

12

3.18

5.23

112.5

-2.24

-0.43

27.0

83

11

8

9

12

0

0

0

13

2.92

3.05

114.6

-1.80

-0.54

27.1

81

9

10

8

10

1

0

1

14

1.20

1.30

137.0

-2.46

-0.58

31.2

82

20

13

9

5

3

0

1

15

1.22

1.33

140.5

-2.39

-0.63

29.7

81

22

14

9

7

1

2

0

16

1.16

1.27

146.2

-2.59

-0.62

30.9

83

22

17

10

5

2

1

0

17

1.24

1.36

200.3

-2.16

-0.51

24.3

84

22

14

17

14

1

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.