PDBsum entry 3o4o Go to PDB code:  Pore analysis for: 3o4o calculated with MOLE 2.0 PDB id 3o4o Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   21 pores, coloured by radius 15 pores, coloured by radius 15 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.40 2.77 27.5 -1.02 -0.59 5.9 94 2 0 6 3 1 0 0   2 1.90 2.12 42.2 0.07 0.13 4.7 82 2 0 3 8 2 2 0   3 1.74 3.12 43.5 -1.00 -0.16 14.7 78 2 3 5 2 2 1 0   4 1.92 2.12 44.0 -0.97 -0.21 16.3 79 4 3 2 6 1 2 0   5 1.61 2.21 51.0 -1.48 -0.63 10.9 91 3 1 7 1 2 1 0   6 1.59 2.22 56.2 -1.01 -0.29 10.0 81 4 1 6 4 2 3 0   7 1.60 2.24 64.1 -1.20 -0.38 15.3 80 6 3 5 3 1 3 0   8 1.68 1.87 103.4 -0.51 -0.17 9.8 85 6 4 11 11 4 2 0   9 1.26 1.27 118.6 -1.01 -0.36 15.4 86 9 7 12 13 3 1 0   10 1.20 1.21 28.5 0.94 0.55 10.3 79 2 3 0 5 1 1 0   11 1.45 3.66 30.5 0.87 0.73 13.2 80 2 4 0 7 2 1 0   12 1.20 1.23 31.9 1.05 0.63 10.5 81 3 1 0 8 1 1 0   13 1.34 3.71 34.7 0.68 0.59 10.5 77 2 2 0 8 2 1 0   14 1.38 1.77 26.8 -0.52 -0.21 5.1 84 2 0 4 2 1 2 0   15 1.56 1.56 28.5 -2.21 -0.48 28.0 79 3 2 1 3 0 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.