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PDBsum entry 3nyn

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 3nyn calculated with MOLE 2.0 PDB id
3nyn
Pores calculated on whole structure Pores calculated excluding ligands

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12 pores, coloured by radius 9 pores, coloured by radius 9 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.81 1.97 29.3 -2.44 -0.24 33.8 77 6 2 0 1 1 1 0  SO4 582 B
2 1.63 1.63 55.5 -1.65 -0.33 22.0 83 9 4 4 3 0 4 0  
3 1.95 4.09 60.5 -2.35 -0.59 32.1 74 5 4 1 0 1 2 1  SO4 579 B
4 1.20 3.14 71.8 -0.71 -0.26 15.7 83 7 6 4 10 0 2 0  SGV 577 B
5 1.37 2.39 71.9 -0.97 -0.31 16.8 81 8 7 6 9 1 0 0  SGV 577 B
6 1.09 1.09 34.3 -2.78 -0.71 32.2 77 6 4 2 0 1 0 0  SO4 584 A
7 1.40 2.73 46.8 -1.02 -0.32 21.8 77 8 6 1 7 0 0 0  SGV 577 A
8 1.38 2.60 71.8 -1.23 -0.41 18.4 80 8 6 6 8 1 1 0  SGV 577 A
9 1.56 1.57 188.2 -1.66 -0.50 22.6 83 10 5 6 2 0 2 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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