PDBsum entry 3nqy Go to PDB code:  Tunnel analysis for: 3nqy calculated with MOLE 2.0 PDB id 3nqy Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.37 1.54 25.6 -0.43 -0.24 13.3 81 2 2 2 6 1 1 0   2 1.36 1.52 37.2 -0.57 -0.12 15.1 78 2 3 3 9 2 0 0   3 1.37 1.37 18.9 0.03 0.15 18.0 81 4 3 1 4 1 0 0   4 1.51 1.58 20.8 -0.87 -0.23 14.0 78 1 2 1 2 3 1 0   5 1.24 2.06 15.2 1.66 0.44 2.4 80 1 0 1 5 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.