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PDBsum entry 3ni5

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Cleft analysis for: 3ni5 PDB id
3ni5
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 2149.88 2.04 61.75 8 11.50 1 13.48 1 10 4 7 4 5 9 0  
2 1055.53 0.00 73.41 3 10.49 2 8.91 2 5 3 6 10 6 2 0 C1H 264[A] (21 atoms)
3 1015.88 0.00 64.25 5 9.84 4 7.52 5 5 3 5 6 1 2 0  
4 868.22 0.00 54.22 10 5.17 9 7.82 4 3 2 2 5 1 4 0  
5 769.08 0.00 65.72 4 6.39 6 6.63 7 5 3 6 2 2 4 0  
6 711.28 0.00 56.15 9 5.44 8 7.86 3 5 1 2 3 5 1 0  
7 360.28 0.00 62.88 6 5.10 10 6.14 8 1 2 2 3 2 2 0  
8 311.34 0.00 62.85 7 9.94 3 7.47 6 1 2 3 1 2 0 0  
9 260.72 0.00 74.82 1 7.92 5 6.12 9 4 1 1 0 3 1 0  
10 274.22 0.00 73.90 2 5.57 7 0.00 10 3 2 1 3 0 0 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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