PDBsum entry 3ndm Go to PDB code:  Pore analysis for: 3ndm calculated with MOLE 2.0 PDB id 3ndm Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   13 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.27 1.31 50.6 -0.62 -0.41 16.7 83 1 7 1 5 3 0 0   2 1.76 3.11 83.8 -1.19 -0.41 23.6 85 6 10 3 7 1 0 1  3ND 900 C 3 1.22 1.36 96.3 -1.24 -0.25 19.0 84 5 9 8 6 3 4 0   4 1.21 1.35 188.0 -1.84 -0.36 24.0 83 11 8 10 6 3 4 0   5 1.22 1.89 188.9 -1.16 -0.32 20.3 82 11 19 8 11 5 4 2   6 1.39 1.46 33.6 0.64 0.35 5.1 73 1 1 1 5 2 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.