PDBsum entry 3ndm Go to PDB code:  Tunnel analysis for: 3ndm calculated with MOLE 2.0 PDB id 3ndm Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.55 1.74 21.5 0.73 0.41 1.9 67 0 0 0 5 2 1 0   2 1.12 2.39 19.6 1.27 0.46 8.9 81 1 2 0 5 1 1 0   3 1.41 2.06 20.7 1.04 0.30 10.3 80 1 3 0 5 1 1 0   4 1.40 1.41 23.0 -2.18 -0.35 30.8 64 3 2 0 0 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.