PDBsum entry 3ndk Go to PDB code:  Pore analysis for: 3ndk calculated with MOLE 2.0 PDB id 3ndk Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 pores, coloured by radius 9 pores, coloured by radius 9 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.34 1.41 48.4 -1.35 -0.16 17.4 78 5 2 0 3 2 0 0  DC 2 T DA 3 T 2 1.81 2.07 53.0 -1.59 -0.19 25.3 81 9 5 4 6 2 0 0  DCP 904 A CA 908 A 3 1.85 1.85 68.5 -1.24 -0.26 21.8 80 6 5 1 7 2 0 0  DCP 904 A CA 908 A DT 112 P DT 113 P DA 114 P DOC 115 P DT 1 T DC 2 T DA 3 T DG 4 T DG 5 T 4 2.98 2.99 69.2 -0.10 0.11 11.2 79 7 2 3 6 3 0 0  DT 112 P DT 113 P DA 114 P DOC 115 P DT 1 T DC 2 T DA 3 T DG 4 T DG 5 T 5 1.23 3.00 72.9 -0.68 -0.18 16.4 85 4 5 5 3 3 0 0   6 1.83 1.83 74.5 -2.17 -0.29 32.2 82 15 9 4 7 1 0 0  DCP 904 A CA 908 A 7 1.23 3.00 101.9 -1.32 -0.42 20.6 80 6 6 4 4 3 0 0  DT 112 P DT 113 P DT 1 T DC 2 T DA 3 T DG 4 T DG 5 T 8 1.23 3.00 108.1 -1.73 -0.43 26.3 80 10 9 3 7 3 0 0  DCP 904 A CA 908 A DT 113 P DA 114 P DOC 115 P DT 1 T 9 1.57 1.73 27.1 -1.11 -0.61 10.4 87 4 0 3 0 1 1 0  DG 103 P DT 109 P DG 110 P DA 11 T DG 12 T DT 13 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.