PDBsum entry 3ndb Go to PDB code:  Pore analysis for: 3ndb calculated with MOLE 2.0 PDB id 3ndb Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   15 pores, coloured by radius 15 pores, coloured by radius 15 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.27 1.40 25.1 -0.74 -0.29 13.8 71 3 0 1 2 0 1 0  C 160 M C 161 M U 162 M G 163 M 2 1.73 1.73 26.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 126 M C 127 M G 128 M U 129 M C 130 M C 132 M U 242 M C 243 M A 244 M C 245 M G 246 M G 247 M G 248 M G 249 M 3 1.72 1.72 37.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 126 M C 127 M G 128 M U 129 M C 132 M G 133 M U 134 M G 135 M G 237 M G 238 M C 239 M U 242 M C 243 M C 245 M G 246 M G 247 M G 248 M G 249 M 4 1.53 1.72 52.6 -1.25 -0.65 14.6 71 4 1 0 1 0 1 0  C 155 M A 156 M U 157 M C 160 M C 161 M G 168 M G 169 M C 197 M C 198 M C 199 M G 200 M G 215 M A 216 M G 217 M 5 1.33 1.55 59.0 -1.06 -0.63 12.8 78 3 1 1 1 0 0 0  C 155 M A 156 M U 157 M C 160 M C 161 M U 162 M G 163 M G 168 M G 169 M C 197 M C 198 M C 199 M G 200 M G 215 M A 216 M G 217 M 6 2.85 2.85 63.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  G 128 M U 129 M C 130 M C 132 M G 133 M U 134 M G 135 M G 136 M G 137 M G 138 M C 139 M U 140 M C 141 M G 231 M A 232 M C 233 M G 234 M U 235 M C 236 M G 237 M G 238 M C 239 M U 242 M C 243 M 7 1.16 1.16 81.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  G 136 M G 137 M G 138 M C 141 M G 142 M C 144 M G 145 M G 146 M U 147 M G 148 M G 149 M G 150 M G 151 M G 152 M A 153 M G 154 M A 156 M G 174 M U 175 M A 176 M A 177 M C 198 M A 225 M G 226 M G 227 M C 228 M A 229 M G 230 M G 231 M A 232 M C 233 M G 234 M U 235 M C 236 M 8 2.59 2.70 81.7 0.62 0.31 16.6 74 2 5 1 10 2 0 0   9 2.34 2.34 90.2 -0.59 -0.41 15.6 71 5 4 0 6 1 0 0  C 155 M A 156 M U 157 M G 174 M C 197 M C 198 M C 199 M G 200 M C 201 M C 202 M A 203 M G 204 M G 205 M G 214 M G 215 M A 216 M G 217 M 10 1.80 2.46 102.5 -1.38 -0.61 20.1 75 7 7 2 3 1 0 0  C 155 M A 156 M U 157 M G 174 M C 197 M C 198 M C 199 M G 200 M C 201 M C 202 M A 203 M G 204 M G 205 M G 214 M G 215 M A 216 M G 217 M 11 1.45 1.63 114.3 -0.96 -0.70 10.7 70 3 0 0 1 0 1 0  C 139 M U 140 M C 141 M G 142 M C 144 M G 145 M G 146 M U 147 M G 148 M G 149 M G 150 M G 151 M G 152 M A 153 M G 154 M C 155 M A 156 M C 158 M U 159 M C 160 M C 161 M G 168 M G 169 M A 170 M G 171 M A 172 M U 173 M G 174 M U 175 M A 176 M A 225 M G 226 M G 227 M C 228 M A 229 M G 230 M G 231 M A 232 M C 233 M U 235 M 12 1.91 2.03 150.6 -0.79 -0.49 15.8 71 7 5 0 6 1 0 0  C 139 M U 140 M C 141 M G 142 M C 144 M G 145 M G 146 M C 178 M C 179 M C 188 M U 189 M G 200 M C 201 M C 202 M A 203 M G 204 M G 205 M G 214 M G 215 M G 222 M G 223 M U 224 M A 225 M G 226 M G 227 M C 228 M A 229 M G 230 M G 231 M A 232 M C 233 M U 235 M 13 1.32 1.60 168.9 -1.89 -0.56 26.0 77 10 12 4 6 2 2 0  G 205 M G 210 M A 211 M 14 1.29 1.89 178.2 -0.95 -0.24 20.6 75 9 9 3 12 3 2 0  G 205 M G 210 M A 211 M 15 1.38 1.38 26.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  G 123 M U 124 M C 125 M U 126 M C 127 M U 129 M C 130 M C 131 M G 248 M G 249 M G 250 M U 251 M G 252 M C 253 M Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.