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PDBsum entry 3nci

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Top Page protein dna_rna ligands metals pores links
Pore analysis for: 3nci calculated with MOLE 2.0 PDB id
3nci
Pores calculated on whole structure Pores calculated excluding ligands

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6 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.70 2.01 74.5 -1.12 -0.18 20.6 79 7 6 1 7 2 0 0  DCP 904 A DT 112 P DT 113 P DA 114 P DOC 115 P DT
1 T DC 2 T DA 3 T DG 5 T
2 1.71 2.07 78.7 -2.17 -0.26 31.6 81 16 10 4 6 1 0 0  DCP 904 A
3 3.00 3.03 79.8 -0.61 0.04 13.9 78 10 3 4 6 3 0 0  DT 112 P DT 113 P DA 114 P DOC 115 P DT 1 T DC 2
T DA 3 T DG 5 T
4 1.48 1.61 86.0 -0.69 -0.24 10.1 79 7 2 3 2 3 1 0  DG 103 P DT 109 P DG 110 P DC 111 P DC 2 T DA 3 T
DG 5 T DT 6 T DA 8 T DA 11 T DG 12 T DT 13 T
5 1.55 1.58 117.7 -0.68 -0.18 12.2 82 13 1 7 5 4 1 0  DG 103 P DT 109 P DG 110 P DC 111 P DT 112 P DT
113 P DA 114 P DOC 115 P DT 1 T DG 5 T DT 6 T DA
8 T DA 11 T DG 12 T DT 13 T
6 1.52 1.56 142.0 -1.56 -0.40 22.1 82 15 8 5 6 3 1 0  DCP 904 A DG 103 P DT 109 P DG 110 P DC 111 P DT
112 P DT 113 P DA 114 P DOC 115 P DT 1 T DG 5 T
DT 6 T DA 8 T DA 11 T DG 12 T DT 13 T

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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