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PDBsum entry 3nav

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Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 3nav calculated with MOLE 2.0 PDB id
3nav
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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12 tunnels, coloured by tunnel radius 12 tunnels, coloured by tunnel radius 12 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.48 30.9 0.20 -0.15 2.8 77 1 0 2 7 3 4 0  
2 1.48 33.9 0.15 -0.07 3.5 76 1 1 2 5 3 4 0  
3 1.48 37.2 0.17 -0.11 2.6 73 1 0 1 6 3 5 0  
4 1.47 52.1 0.32 -0.06 3.5 76 0 1 4 8 6 4 0  
5 1.45 61.2 -0.22 -0.14 6.9 78 0 3 5 9 7 4 0  601 EDO A
6 1.36 7.5 -1.94 -0.56 4.8 73 0 1 2 0 1 3 0  
7 2.54 8.9 0.16 -0.50 2.6 81 0 0 1 3 1 0 0  
8 2.35 9.5 -0.28 -0.54 2.3 77 0 0 2 2 1 1 0  
9 2.20 10.3 -0.08 -0.31 2.2 77 0 0 2 3 0 1 0  
10 1.71 10.4 0.40 -0.37 2.4 85 0 0 1 4 1 0 0  
11 1.66 11.0 0.08 -0.39 2.0 80 0 0 2 3 1 1 0  
12 2.24 6.2 -1.96 -0.66 4.8 78 0 1 2 0 0 3 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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