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PDBsum entry 3n8y

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Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 3n8y calculated with MOLE 2.0 PDB id
3n8y
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.56 31.4 0.10 -0.06 10.0 84 3 0 3 5 1 2 0  671 NAG A
2 1.45 55.4 1.60 0.60 3.1 78 1 0 3 17 7 2 0  701 DIF A,751 BOG A
3 1.41 58.6 0.50 0.35 9.1 82 3 2 4 13 7 1 0  701 DIF A,751 BOG A
4 2.42 6.8 -0.66 0.06 21.6 71 1 1 0 2 1 0 0  
5 2.45 12.5 -0.95 -0.12 23.7 77 2 1 0 3 1 0 0  
6 1.82 14.3 -1.89 -0.23 32.8 74 2 3 0 2 1 0 0  
7 1.57 10.6 -0.19 -0.09 10.8 79 1 1 1 3 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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