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PDBsum entry 3n8y

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Top Page protein ligands Protein-protein interface(s) clefts links
Cleft analysis for: 3n8y PDB id
3n8y
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
 residue conservation
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 25822.12 8.68 73.54 2 13.05 3 29.89 1 71 45 84 96 57 69 12 NAG 671[A], NDG 672[A], BOG 751[A],
HEM 601[B], NAG 1671[B], NDG 
1672[B], BOG 1750[B], BOG 1751[B]
(128 atoms)
2 2975.06 0.00 72.97 3 13.19 2 11.79 3 11 6 9 16 6 4 0 HEM 601[A] (43 atoms)
3 2774.67 0.00 65.71 7 9.48 6 12.95 2 11 6 12 5 6 7 0  
4 2424.94 0.00 62.93 9 8.31 8 10.17 4 11 6 12 8 8 5 1  
5 947.95 0.00 65.43 8 7.84 9 7.90 6 3 4 4 2 5 3 2  
6 807.05 0.00 61.97 10 8.82 7 7.58 7 2 3 2 3 2 5 0  
7 586.41 0.00 72.65 4 12.12 4 8.12 5 4 2 3 4 1 1 0  
8 716.77 0.00 66.46 5 6.24 10 7.01 8 2 2 5 2 4 5 1 NAG 1661[B], NDG 1662[B] (6 atoms)
9 488.53 0.00 97.97 1 14.86 1 0.00 10 1 0 2 13 7 1 0 DIF 701[A] (19 atoms)
10 515.11 0.00 66.18 6 10.00 5 6.41 9 4 2 3 4 1 1 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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