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PDBsum entry 3n8v

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Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 3n8v calculated with MOLE 2.0 PDB id
3n8v
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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10 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.35 42.8 0.38 0.12 7.7 81 4 1 5 6 4 1 0  1671 NAG B
2 1.26 85.6 0.05 0.06 9.0 78 7 0 6 9 12 2 0  
3 1.26 86.8 -0.12 0.02 9.0 77 6 0 7 7 12 3 0  
4 1.29 88.0 -0.38 -0.04 12.5 75 7 4 7 14 9 2 2  851 GOL B,1751 BOG B,1752 BOG B
5 1.37 113.6 -0.43 0.05 9.4 79 9 0 10 14 8 3 0  851 GOL B,1751 BOG B,1752 BOG B
6 1.31 127.0 -0.50 -0.04 9.4 75 8 3 12 14 9 6 2  851 GOL B,1751 BOG B,1752 BOG B
7 1.64 5.5 -2.30 -0.41 35.2 77 2 2 0 1 1 0 0  
8 1.75 6.0 0.21 -0.21 4.3 77 1 0 0 4 0 2 0  
9 2.33 1.9 -0.33 -0.02 7.6 79 0 1 2 0 1 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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