PDBsum entry 3n4l

Pore analysis for: 3n4l calculated with

MOLE 2.0

PDB id

3n4l

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

7 pores, coloured by radius

10 pores, coloured by radius

10 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.35

2.47

25.3

-0.61

-0.38

10.8

90

1

1

2

4

1

1

0

842 407 C

2

1.60

1.60

26.8

-0.25

-0.38

5.9

88

1

1

2

3

1

1

0

842 407 A

3

1.69

1.70

33.9

-1.20

-0.53

14.1

87

3

2

4

3

1

0

0

4

1.19

1.36

39.0

-1.56

-0.39

13.5

87

3

3

6

4

3

0

0

5

1.35

2.58

49.7

-1.30

-0.56

11.2

92

3

2

6

4

1

1

0

842 407 C

6

1.61

1.61

55.5

-1.01

-0.59

7.3

88

3

2

6

4

2

1

0

842 407 A

7

1.44

1.51

74.8

-0.79

-0.49

10.1

91

4

2

6

8

1

1

0

842 407 A

8

1.28

1.45

80.5

-1.26

-0.35

16.3

87

7

3

6

9

3

0

0

9

1.29

1.42

175.4

-0.98

-0.32

18.6

86

11

11

7

11

2

2

0

10

1.13

1.59

185.2

-1.70

-0.38

19.9

84

11

5

6

5

4

0

0

842 407 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.