spacer
spacer

PDBsum entry 3n2k

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 3n2k calculated with MOLE 2.0 PDB id
3n2k
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
5 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.24 2.14 21.6 -0.67 -0.18 15.2 90 3 2 3 2 1 1 0  
2 1.24 1.43 24.6 -0.45 -0.30 10.9 88 3 0 3 2 1 1 0  
3 1.14 1.15 25.4 0.92 0.19 5.7 82 1 1 3 8 1 0 0  
4 1.33 2.19 15.3 1.67 0.64 1.2 84 0 0 3 4 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer