PDBsum entry 3n0d Go to PDB code:  Tunnel analysis for: 3n0d calculated with MOLE 2.0 PDB id 3n0d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.62 1.84 20.3 -2.28 -0.26 21.6 71 4 0 1 0 1 3 0   2 1.65 1.83 23.7 0.38 0.09 9.6 79 2 3 3 5 5 0 1   3 1.79 2.08 16.7 -1.80 -0.36 22.1 78 1 4 0 2 1 1 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.